PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0110s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C2H2
Protein Properties Length: 131aa    MW: 14850.5 Da    PI: 7.55
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0110s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.21.8e-076081223
                         EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                          C+ Cgk F+r  nL+ H+r+H
  Mapoly0110s0001.1.p 60 FCELCGKGFKRDANLRMHMRSH 81
                         6********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.57E-75683No hitNo description
Gene3DG3DSA:3.30.160.606.6E-75683IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.6325986IPR007087Zinc finger, C2H2
PfamPF121712.0E-55981IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00145981IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MFPSNSASGS HGSEDQEMGV RSRRGASRYE FDDGEGENLV DGYQLVELDG QEILAEHTHF  60
CELCGKGFKR DANLRMHMRS HGDEYKTPEA LARPQKPIDE QTPEIPKRFS SPHVGCKRNV  120
RFCVRLRSRR *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001754288.13e-33predicted protein, partial
RefseqXP_002978642.11e-33hypothetical protein SELMODRAFT_58350, partial
RefseqXP_002984580.12e-33hypothetical protein SELMODRAFT_48272, partial
RefseqXP_010256329.14e-32PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
RefseqXP_010256330.14e-32PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
SwissprotQ9C8N53e-31STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLD8S5N82e-33D8S5N8_SELML; Putative uncharacterized protein (Fragment)
TrEMBLD8SMQ82e-33D8SMQ8_SELML; Putative uncharacterized protein (Fragment)
TrEMBLA9RJP33e-33A9RJP3_PHYPA; Predicted protein (Fragment)
TrEMBLA0A0B0N5A15e-32A0A0B0N5A1_G
STRINGPP1S13_145V6.14e-31(Physcomitrella patens)
STRINGGSMUA_Achr5P01170_0013e-31(Musa acuminata)
STRINGEFJ142255e-33(Selaginella moellendorffii)
STRINGEFJ200895e-33(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.36e-33C2H2 family protein